STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC16730.1Beta-hexosaminidase. (373 aa)    
Predicted Functional Partners:
AHC13956.1
N-acylglucosamine 2-epimerase.
     
  0.900
AHC16728.1
Membrane protein, putative.
       0.620
AHC16729.1
Transcriptional regulator, PadR family.
       0.620
AHC16727.1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.507
AHC16731.1
ABC-type sugar transport system, periplasmic binding protein YcjN.
     
 0.456
AHC14050.1
Hypothetical protein.
  
  
 0.416
AHC14804.1
TolA protein.
  
  
 0.416
AHC15393.1
Putative beta-lactamase class C.
 
  
 0.410
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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