Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC16754.1Photoactive yellow protein (PYP). (125 aa)    
Predicted Functional Partners:
AHC16755.1
Acyl-CoA synthetase, AMP-(fatty) acid ligase.
 
   
 0.919
AHC15910.1
Chemotaxis protein methyltransferase CheR.
 
 
 0.768
AHC15279.1
Positive regulator of CheA protein activity (CheW).
  
 
 0.721
AHC16753.1
Histidine ammonia-lyase.
 
   
 0.681
AHC16752.1
Glutamine amidotransferase class-I.
       0.559
AHC14547.1
Positive regulator of CheA protein activity (CheW).
  
 
 0.486
AHC15892.1
Positive regulator of CheA protein activity (CheW).
  
 
 0.486
AHC15332.1
Hypothetical protein.
  
 
 0.471
AHC14969.1
Ammonium transporter.
  
 
 0.440
AHC16771.1
Hypothetical protein.
  
 
   0.436
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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