STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ63297.1Ribonuclease BN/unknown domain fusion protein. (435 aa)    
Predicted Functional Partners:
AKJ63298.1
Putative protein involved in outer membrane biogenesis.
 
  
 0.788
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
       0.785
nifU_1
NifU-like protein.
  
  
 0.598
nifS
Cysteine desulfurase.
  
  
 0.578
mlaA
Putative phospholipid-binding lipoprotein MlaA precursor.
  
     0.493
AKJ64074.1
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.454
rlmL
Ribosomal RNA large subunit methyltransferase L; Belongs to the methyltransferase superfamily.
 
     0.451
mlaC
Putative phospholipid-binding protein MlaC precursor.
  
    0.423
nifU_2
NifU-like protein.
  
  
 0.407
secD
Bifunctional preprotein translocase subunit SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
   
 0.406
Your Current Organism:
Kiritimatiella glycovorans
NCBI taxonomy Id: 1307763
Other names: DSM 26986, JCM 19195, K. glycovorans, Kiritimatiella glycovorans Spring et al. 2017, Verrucomicrobia bacterium L21-Fru-AB, bacterium L21-Fru-AB, strain L21-Fru-AB
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