STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ63348.1Transport protein TonB. (245 aa)    
Predicted Functional Partners:
exbD_1
Biopolymer transport protein ExbD.
  
   0.879
exbB_1
Biopolymer transport protein ExbB.
  
   0.850
cirA
Colicin I receptor precursor.
  
 
 0.540
fecA
Iron(III) dicitrate transport protein FecA.
  
 
 0.537
btuB
Outer membrane cobalamin translocator.
  
 
 0.537
AKJ65467.1
TonB-dependent receptor.
  
 
 0.537
AKJ65106.1
OmpA/MotB domain protein.
 
 
 0.519
AKJ65585.1
Hypothetical protein.
  
     0.502
AKJ63345.1
Hypothetical protein.
       0.496
AKJ63366.1
Biopolymer transport protein ExbD.
   
   0.490
Your Current Organism:
Kiritimatiella glycovorans
NCBI taxonomy Id: 1307763
Other names: DSM 26986, JCM 19195, K. glycovorans, Kiritimatiella glycovorans Spring et al. 2017, Verrucomicrobia bacterium L21-Fru-AB, bacterium L21-Fru-AB, strain L21-Fru-AB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.