STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB_2Beta-xylosidase. (605 aa)    
Predicted Functional Partners:
xynB_1
Beta-xylosidase.
 
  
 
0.966
xynB_3
Beta-xylosidase.
  
  
 
0.926
uxaC
Uronate isomerase.
     
  0.800
AKJ64173.1
Glycosyl hydrolases family 2, sugar binding domain.
  
     0.738
AKJ65475.1
Beta-xylosidase.
 
   
 0.737
AKJ63690.1
Glycosyl hydrolases family 2, sugar binding domain.
  
     0.723
AKJ63801.1
Glycosyl hydrolases family 2.
  
     0.717
AKJ63599.1
Hypothetical protein.
  
     0.709
AKJ65630.1
Glycoside hydrolase family 2 sugar binding.
  
     0.701
AKJ64191.1
Alpha-L-rhamnosidase.
  
     0.641
Your Current Organism:
Kiritimatiella glycovorans
NCBI taxonomy Id: 1307763
Other names: DSM 26986, JCM 19195, K. glycovorans, Kiritimatiella glycovorans Spring et al. 2017, Verrucomicrobia bacterium L21-Fru-AB, bacterium L21-Fru-AB, strain L21-Fru-AB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.