STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligC_24-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. (444 aa)    
Predicted Functional Partners:
AKJ64395.1
Hypothetical protein.
 
     0.768
ycjS
Putative oxidoreductase YcjS.
 
     0.762
AKJ64393.1
Hydroxypyruvate isomerase.
 
    0.743
AKJ64389.1
Putative membrane protein.
 
     0.742
AKJ64394.1
Oxidoreductase domain protein.
 
    
0.720
afr_2
1,5-anhydro-D-fructose reductase.
  
     0.712
AKJ64396.1
Hypothetical protein.
       0.689
iolI
Inosose isomerase.
 
  
 0.601
AKJ64398.1
Phosphoenolpyruvate synthase.
 
     0.599
AKJ64205.1
SMP-30/Gluconolaconase/LRE-like region protein.
 
    0.533
Your Current Organism:
Kiritimatiella glycovorans
NCBI taxonomy Id: 1307763
Other names: DSM 26986, JCM 19195, K. glycovorans, Kiritimatiella glycovorans Spring et al. 2017, Verrucomicrobia bacterium L21-Fru-AB, bacterium L21-Fru-AB, strain L21-Fru-AB
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