STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xcpQGeneral secretion pathway protein D; Belongs to the bacterial secretin family. (619 aa)    
Predicted Functional Partners:
gspD
Putative general secretion pathway protein D.
  
  
 
0.929
xcpT_1
PilD-dependent protein PddA.
  
    0.711
AKJ64835.1
Type IV-A pilus assembly ATPase PilB.
 
    0.700
pilB_2
Type IV fimbrial assembly protein.
  
    0.618
AKJ64834.1
Type IV fimbrial assembly protein PilC.
 
  
 0.603
exbD_1
Biopolymer transport protein ExbD.
  
     0.587
AKJ64887.1
Type II secretion system protein E.
  
    0.579
epsE_4
Type II secretion system protein E.
  
    0.561
AKJ63550.1
Pilus biosynthesis protein.
  
    0.559
exbB_1
Biopolymer transport protein ExbB.
  
    0.546
Your Current Organism:
Kiritimatiella glycovorans
NCBI taxonomy Id: 1307763
Other names: DSM 26986, JCM 19195, K. glycovorans, Kiritimatiella glycovorans Spring et al. 2017, Verrucomicrobia bacterium L21-Fru-AB, bacterium L21-Fru-AB, strain L21-Fru-AB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.