STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirAColicin I receptor precursor. (666 aa)    
Predicted Functional Partners:
AKJ64892.1
Hypothetical protein.
 
     0.908
rpfC
Sensory/regulatory protein RpfC.
     
 0.674
AKJ64796.1
Transport protein TonB.
 
 
 0.655
AKJ64364.1
Hypothetical protein; TonB family C-terminal domain.
 
 
 0.636
AKJ65461.1
Transport protein TonB.
 
 
 0.604
lgrD
Linear gramicidin synthase subunit D.
  
  
 0.584
AKJ63348.1
Transport protein TonB.
  
 
 0.540
AKJ64171.1
Autotransporter-associated beta strand repeat.
  
 
 
 0.534
AKJ63499.1
Autotransporter-associated beta strand repeat.
  
 
 
 0.508
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
       0.478
Your Current Organism:
Kiritimatiella glycovorans
NCBI taxonomy Id: 1307763
Other names: DSM 26986, JCM 19195, K. glycovorans, Kiritimatiella glycovorans Spring et al. 2017, Verrucomicrobia bacterium L21-Fru-AB, bacterium L21-Fru-AB, strain L21-Fru-AB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.