STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO13738.1Outer membrane channel protein. (461 aa)    
Predicted Functional Partners:
yibH
Inner membrane protein YibH; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.955
bepE_1
Efflux pump membrane transporter BepE; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.917
arpA
Antibiotic efflux pump periplasmic linker protein ArpA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.878
macA_2
Macrolide-specific efflux protein MacA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.873
czcB_1
Cation efflux system protein CzcB.
  
  0.845
ALO15895.1
Efflux transporter, RND family, MFP subunit.
  
  0.845
ALO16091.1
Copper/silver efflux system membrane fusion protein CusB.
  
  0.845
cirA_5
Colicin I receptor precursor.
  
     0.600
cirA_2
Colicin I receptor precursor.
  
     0.573
ALO13735.1
Hypothetical protein.
       0.547
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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