STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdhC_1Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex. (450 aa)    
Predicted Functional Partners:
pdhB
Pyruvate dehydrogenase E1 component subunit beta.
 0.999
bkdA2
2-oxoisovalerate dehydrogenase subunit beta.
 0.999
lpdC
Dihydrolipoyl dehydrogenase.
 0.996
sucA
2-oxoglutarate dehydrogenase E1 component.
 0.991
pta_1
Phosphate acetyltransferase.
  
 
 0.918
mmgC_1
Acyl-CoA dehydrogenase.
   
 0.914
accD5_1
Putative propionyl-CoA carboxylase beta chain 5.
  
 
 0.912
acuI
Putative acrylyl-CoA reductase AcuI.
   
 0.911
ALO14957.1
Acetyl coenzyme A synthetase (ADP forming), alpha domain.
    
  0.901
lplJ
Lipoate-protein ligase LplJ.
 
 0.849
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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