ALO14305.1 protein (Salinivirga cyanobacteriivorans)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ALO14305.1

Hypothetical protein. (436 aa)

Predicted Functional Partners:

ALO14306.1

0.924

ALO14304.1

0.918

ALO15126.1

0.769

ALO15392.1

0.677

ALO16079.1

0.662

ALO16073.1

0.648

ALO16615.1

0.611

ALO15641.1

0.596

gumD

0.591

ALO16724.1

0.590

Your Current Organism:

Salinivirga cyanobacteriivorans

NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALO14304.1	ALO14305.1	L21SP5_00632	L21SP5_00633	Hypothetical protein.	Hypothetical protein.	0.918
ALO14304.1	ALO14306.1	L21SP5_00632	L21SP5_00634	Hypothetical protein.	Glycosyl transferases group 1.	0.931
ALO14304.1	ALO15126.1	L21SP5_00632	L21SP5_01476	Hypothetical protein.	Hypothetical protein.	0.401
ALO14304.1	ALO15392.1	L21SP5_00632	L21SP5_01750	Hypothetical protein.	Putative O-glycosylation ligase, exosortase A-associated.	0.572
ALO14304.1	ALO15641.1	L21SP5_00632	L21SP5_02002	Hypothetical protein.	Lipid A core - O-antigen ligase.	0.509
ALO14304.1	ALO16073.1	L21SP5_00632	L21SP5_02446	Hypothetical protein.	Hypothetical protein.	0.634
ALO14304.1	ALO16079.1	L21SP5_00632	L21SP5_02452	Hypothetical protein.	Gliding motility associated protein GldN.	0.486
ALO14304.1	ALO16615.1	L21SP5_00632	L21SP5_02995	Hypothetical protein.	Hypothetical protein; Por secretion system C-terminal sorting domain.	0.615
ALO14304.1	ALO16724.1	L21SP5_00632	L21SP5_03109	Hypothetical protein.	Hypothetical protein.	0.702
ALO14305.1	ALO14304.1	L21SP5_00633	L21SP5_00632	Hypothetical protein.	Hypothetical protein.	0.918
ALO14305.1	ALO14306.1	L21SP5_00633	L21SP5_00634	Hypothetical protein.	Glycosyl transferases group 1.	0.924
ALO14305.1	ALO15126.1	L21SP5_00633	L21SP5_01476	Hypothetical protein.	Hypothetical protein.	0.769
ALO14305.1	ALO15392.1	L21SP5_00633	L21SP5_01750	Hypothetical protein.	Putative O-glycosylation ligase, exosortase A-associated.	0.677
ALO14305.1	ALO15641.1	L21SP5_00633	L21SP5_02002	Hypothetical protein.	Lipid A core - O-antigen ligase.	0.596
ALO14305.1	ALO16073.1	L21SP5_00633	L21SP5_02446	Hypothetical protein.	Hypothetical protein.	0.648
ALO14305.1	ALO16079.1	L21SP5_00633	L21SP5_02452	Hypothetical protein.	Gliding motility associated protein GldN.	0.662
ALO14305.1	ALO16615.1	L21SP5_00633	L21SP5_02995	Hypothetical protein.	Hypothetical protein; Por secretion system C-terminal sorting domain.	0.611
ALO14305.1	ALO16724.1	L21SP5_00633	L21SP5_03109	Hypothetical protein.	Hypothetical protein.	0.590
ALO14305.1	gumD	L21SP5_00633	L21SP5_02314	Hypothetical protein.	UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.	0.591
ALO14306.1	ALO14304.1	L21SP5_00634	L21SP5_00632	Glycosyl transferases group 1.	Hypothetical protein.	0.931

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

32

average node degree:

5.82

avg. local clustering coefficient:

0.667

expected number of edges:

11

PPI enrichment p-value:

2.07e-07

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0015031

Protein transport

10 of 110

1.56

3.15

2.22e-12

GO:0071705

Nitrogen compound transport

11 of 190

1.36

2.44

2.22e-12

GO:0071702

Organic substance transport

11 of 277

1.2

1.85

1.58e-11

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0022857

Transmembrane transporter activity

11 of 432

1.0

1.24

8.14e-09

GO:0031992

Energy transducer activity

2 of 4

2.3

0.9

0.0222

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005887

Integral component of plasma membrane

6 of 58

1.61

2.42

2.37e-07

GO:0005886

Plasma membrane

11 of 653

0.82

0.88

1.31e-07

GO:0016021

Integral component of membrane

11 of 967

0.65

0.62

1.90e-06

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:5771

Mixed, incl. TonB, C-terminal, and MotA/TolQ/ExbB proton channel

8 of 20

2.2

5.9

3.02e-14

CL:5763

TonB-dependent receptor-like, beta-barrel domain superfamily, and Protein transport

10 of 63

1.8

4.52

9.53e-15

CL:5764

TonB-dependent receptor-like, beta-barrel domain superfamily, and Protein transport

9 of 56

1.8

4.32

1.32e-13

CL:5772

Mixed, incl. MotA/TolQ/ExbB proton channel, and Energy transducer activity

5 of 13

2.18

3.64

2.60e-08

CL:5786

Mixed, incl. Putative MotA/TolQ/ExbB family protein, and Energy transducer activity

3 of 6

2.3

2.14

8.01e-05

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005886

Plasma membrane

9 of 526

0.83

0.77

8.07e-05

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0653

Protein transport

10 of 45

1.94

5.58

1.11e-16

KW-0735

Signal-anchor

2 of 5

2.2

1.23

0.0048

KW-0812

Transmembrane

11 of 949

0.66

0.62

4.44e-06

KW-0997

Cell inner membrane

3 of 81

1.17

0.61

0.0347

KW-1133

Transmembrane helix

10 of 904

0.64

0.56

6.65e-05

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01618

MotA/TolQ/ExbB proton channel family

8 of 11

2.46

6.99

2.48e-15

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR002898

MotA/TolQ/ExbB proton channel

8 of 11

2.46

6.82

6.37e-15

IPR017270

Putative MotA/TolQ/ExbB family protein

2 of 2

2.6

0.85

0.0288

IPR003538

Gram-negative bacterial TonB protein

2 of 4

2.3

0.72

0.0479

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