STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO14854.1Nudix hydrolase. (354 aa)    
Predicted Functional Partners:
ALO14855.1
Putative protein phosphatase 2C-type.
  
    0.775
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
      0.570
ALO14853.1
Cell division protein FtsN.
       0.550
ALO14519.1
Diphosphomevalonate decarboxylase.
  
  
 0.488
ALO14856.1
Hypothetical protein.
       0.474
ALO13718.1
Hypothetical protein.
  
  
 0.472
mvaA
3-hydroxy-3-methylglutaryl-coenzyme A reductase.
  
  
 0.440
ALO14857.1
Nitronate monooxygenase.
       0.425
wbbL_1
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase.
       0.402
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.