STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rexRedox-sensing transcriptional repressor rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (203 aa)    
Predicted Functional Partners:
hypF
Carbamoyltransferase HypF.
       0.747
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.691
hypC
Hydrogenase isoenzymes formation protein HypC.
       0.638
rpsP
30S ribosomal protein S16; BS17; Belongs to the bacterial ribosomal protein bS16 family.
   
    0.544
asrB
Anaerobic sulfite reductase subunit B.
     
 0.517
asrA
Anaerobic sulfite reductase iron-sulfur subunit.
       0.494
ydhX
Putative ferredoxin-like protein YdhX precursor.
       0.491
nuoH
NADH-quinone oxidoreductase subunit H.
       0.475
ndhJ
NAD(P)H-quinone oxidoreductase subunit J.
       0.464
hycG
Hydrogenase-3 component G.
       0.464
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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