STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcdC_1Glutaconyl-CoA decarboxylase subunit gamma. (168 aa)    
Predicted Functional Partners:
accA1_2
Acetyl-/propionyl-coenzyme A carboxylase alpha chain; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
  
  0.979
accD5_1
Putative propionyl-CoA carboxylase beta chain 5.
  
 0.858
cfiA
2-oxoglutarate carboxylase large subunit.
  
     0.774
ALO14525.1
Methylmalonyl-CoA carboxyltransferase 12S subunit.
  
 0.668
ALO17120.1
Methylmalonyl-CoA carboxyltransferase 12S subunit.
  
 0.668
accD5_3
Putative propionyl-CoA carboxylase beta chain 5.
  
 0.668
accD5_2
Putative propionyl-CoA carboxylase beta chain 5.
  
 0.660
ALO15020.1
Hypothetical protein.
       0.568
pdhB
Pyruvate dehydrogenase E1 component subunit beta.
  
 
 0.484
bkdA2
2-oxoisovalerate dehydrogenase subunit beta.
  
 
 0.481
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.