STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
surA_1Peptidyl-prolyl cis-trans isomerase SurA. (706 aa)    
Predicted Functional Partners:
ALO14124.1
Tol-pal system protein YbgF.
  
    0.759
lepB
Signal peptidase I.
  
  
 0.746
ALO15442.1
Hypothetical protein.
  
     0.732
ALO16411.1
Hypothetical protein.
 
     0.731
ALO15735.1
Hypothetical protein.
  
     0.729
bamA
Outer membrane protein Omp85.
 
 
 0.722
ALO15676.1
Hypothetical protein.
 
     0.712
ALO17545.1
Organic solvent tolerance protein OstA.
 
  
 0.679
mltD_1
Membrane-bound lytic murein transglycosylase D precursor.
 
     0.670
ALO14238.1
Putative membrane protein.
 
     0.667
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.