STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sipPSignal peptidase I P; Belongs to the peptidase S26 family. (322 aa)    
Predicted Functional Partners:
lepB
Signal peptidase I.
  
  
 
0.915
ALO17101.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 
0.905
mdtF
Multidrug resistance protein MdtF; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
    0.809
bepE_2
Efflux pump membrane transporter BepE; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.777
bepF
Efflux pump periplasmic linker BepF; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.777
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
    0.618
ALO15358.1
Hypothetical protein.
       0.578
macA_1
Macrolide-specific efflux protein MacA precursor.
  
    0.533
ALO15352.1
Macrolide export permease protein MacB.
       0.529
ALO15351.1
Type I secretion outer membrane protein, TolC family.
       0.524
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.