STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO15448.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
gbuA
Glycine betaine/carnitine transport ATP-binding protein GbuA.
  
 
 0.800
ALO15896.1
Hypothetical protein.
  
     0.741
ALO14964.1
Hypothetical protein; Alanine dehydrogenase/PNT, N-terminal domain.
  
     0.692
opuAB
Glycine betaine transport system permease protein OpuAB.
  
  
 0.622
ALO14680.1
Hypothetical protein.
  
     0.578
ALO16299.1
Plasmid pRiA4b ORF-3-like protein.
  
     0.516
ruvA
Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
       0.506
lysDH
Lysine 6-dehydrogenase.
  
     0.488
ALO14461.1
Thiol-disulfide oxidoreductase.
  
     0.470
ALO15446.1
Cell surface protein SprA.
       0.467
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.