STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO15502.1Magnesium chelatase subunit D. (621 aa)    
Predicted Functional Partners:
sigK
Sigma-K factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.794
ALO15052.1
Hypothetical protein; Alpha-2-macroglobulin family N-terminal region.
 
     0.624
ALO15500.1
Hypothetical protein.
       0.580
pbpF
Penicillin-binding protein F.
  
     0.477
ALO16458.1
TraB family protein.
  
     0.435
gatB
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
       0.405
ansA_2
L-asparaginase 1.
       0.405
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.