STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO15619.1Hypothetical protein. (278 aa)    
Predicted Functional Partners:
gbuA
Glycine betaine/carnitine transport ATP-binding protein GbuA.
  
 
 0.800
ALO16411.1
Hypothetical protein.
  
     0.746
ALO17321.1
Hypothetical protein.
  
     0.705
ALO16057.1
Hypothetical protein.
  
     0.637
ALO15178.1
Hypothetical protein.
  
     0.635
opuAB
Glycine betaine transport system permease protein OpuAB.
  
  
 0.622
ylaC_1
RNA polymerase sigma factor YlaC; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.622
ALO15618.1
Hypothetical protein.
       0.618
ALO16279.1
Rod shape-determining protein MreD.
  
     0.607
ALO15160.1
Hypothetical protein.
  
     0.599
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.