STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO16204.1Photosystem I assembly protein Ycf3. (550 aa)    
Predicted Functional Partners:
ALO16166.1
Putative protein containing caspase domain protein.
 
 0.645
apr_2
Subtilisin DY.
 
   0.573
nanM
N-acetylneuraminate epimerase precursor.
  
     0.564
htpG
High temperature protein G.
   
 0.554
dnaK
Heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.533
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.514
yrrB_7
TPR repeat-containing protein YrrB.
  
     0.495
ALO16203.1
Flavodoxin.
  
    0.493
ALO15246.1
Putative PEP-CTERM system TPR-repeat lipoprotein.
 
     0.486
ALO16205.1
Hypothetical protein.
       0.480
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.