STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmgB_1Putative 3-hydroxybutyryl-CoA dehydrogenase. (445 aa)    
Predicted Functional Partners:
echA8_2
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.999
pcaF
Beta-ketoadipyl-CoA thiolase.
 
 0.998
thlA
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.992
paaF
2,3-dehydroadipyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.991
acdA_1
Acyl-CoA dehydrogenase.
 
 
 0.943
mmgB_2
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 
  
 
0.931
mmgC_1
Acyl-CoA dehydrogenase.
 
 
 0.847
acdA_2
Acyl-CoA dehydrogenase.
 
 
 0.827
echA8_1
Putative enoyl-CoA hydratase echA8.
 
 0.821
etfB_2
Electron transfer flavoprotein small subunit.
  
 
 0.802
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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