STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hacA_1Homoaconitase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (595 aa)    
Predicted Functional Partners:
hicd
Homoisocitrate dehydrogenase.
 
 0.999
hacA_2
Homoaconitase large subunit.
 
0.999
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 0.877
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.866
maeB
NADP-dependent malic enzyme.
  
 
 0.854
ppdK
Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
  0.814
korA_2
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.813
korB_1
2-oxoglutarate oxidoreductase subunit KorB.
   
 
  0.812
korB_2
2-oxoglutarate oxidoreductase subunit KorB.
   
 
  0.812
gcdB
Glutaconyl-CoA decarboxylase subunit beta.
     
 0.806
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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