STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kamAL-lysine 2,3-aminomutase. (728 aa)    
Predicted Functional Partners:
ALO14964.1
Hypothetical protein; Alanine dehydrogenase/PNT, N-terminal domain.
    
  0.901
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.810
ALO15740.1
Transglutaminase-like superfamily protein.
 
     0.748
nifJ
Pyruvate-flavodoxin oxidoreductase.
   
   0.532
cheR_1
Chemotaxis protein methyltransferase.
   
   0.528
cheR_2
Chemotaxis protein methyltransferase.
    
   0.518
ALO15401.1
CheR methyltransferase, SAM binding domain.
    
   0.518
cheR_3
Chemotaxis protein methyltransferase.
    
   0.518
ALO16993.1
Multidrug resistance protein.
  
     0.506
bkdA2
2-oxoisovalerate dehydrogenase subunit beta.
  
     0.503
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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