STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylaC_3RNA polymerase sigma factor YlaC; Belongs to the sigma-70 factor family. ECF subfamily. (166 aa)    
Predicted Functional Partners:
ALO16317.1
Putative transmembrane transcriptional regulator (anti-sigma factor).
  
 
 0.858
ALO16316.1
Hypothetical protein.
  
    0.621
sigW_1
Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.591
ylaC_2
RNA polymerase sigma factor YlaC; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.591
sigW_3
Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.535
sigW_4
Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.530
clcA_2
H(+)/Cl(-) exchange transporter ClcA.
  
    0.493
cnrH
RNA polymerase sigma factor CnrH; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.484
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.456
carQ
RNA polymerase sigma factor CarQ; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.444
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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