STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO16390.1Beta/alpha-amylase precursor; Belongs to the glycosyl hydrolase 13 family. (600 aa)    
Predicted Functional Partners:
amyB_1
Alpha-amylase 2.
  
0.932
ALO16396.1
SusD family protein.
 
    0.844
ALO16395.1
Hypothetical protein.
 
  
 0.837
ALO16397.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.823
ALO16399.1
sucrose/H+ symporter.
 
  
 0.786
treZ
Malto-oligosyltrehalose trehalohydrolase; Belongs to the glycosyl hydrolase 13 family.
 
  
0.746
ALO17046.1
Enterobactin/ferric enterobactin esterase.
     0.741
malP_2
Maltose phosphorylase.
 
  
 0.672
treS
Trehalose synthase/amylase TreS.
 
 
0.670
ALO14659.1
Retaining alpha-galactosidase precursor.
 
  
 0.638
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.