STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nlpD_2Murein hydrolase activator NlpD precursor. (319 aa)    
Predicted Functional Partners:
ycgE_1
HTH-type transcriptional repressor YcgE.
 
    0.791
capA
Capsule biosynthesis protein CapA.
       0.738
ALO15683.1
Putative acyltransferase.
 
   
 0.734
ALO16471.1
Peptidyl-prolyl cis-trans isomerase, EpsD family.
  
   
 0.722
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.597
ftsI
Peptidoglycan synthase FtsI precursor.
 
   
 0.466
rseP
Regulator of sigma E protease.
 
  
 0.449
mrcA
Penicillin-binding protein 1A.
  
   
 0.428
pbpF
Penicillin-binding protein F.
  
     0.422
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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