STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO16708.1Hypothetical protein. (409 aa)    
Predicted Functional Partners:
ALO16709.1
TonB-dependent receptor.
     0.899
ALO14543.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
 0.589
ALO14782.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.588
ALO13687.1
Hypothetical protein.
   
 
 0.578
bamD
Outer membrane protein assembly factor BamD precursor.
   
 
 0.578
ALO16064.1
Enterobactin receptor protein.
 
     0.568
rssA_1
NTE family protein RssA.
  
 
 0.565
rssA_3
NTE family protein RssA.
  
 
 0.565
ALO14196.1
Hypothetical protein.
  
    0.563
ALO16138.1
Outer membrane protein/protective antigen OMA87.
  
 
 0.548
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.