STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yadHInner membrane transport permease YadH. (244 aa)    
Predicted Functional Partners:
drrA_2
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.960
nmtR
HTH-type transcriptional regulator NmtR.
 
     0.837
ybhR_2
Inner membrane transport permease YbhR.
  
  
  0.768
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
  
 0.710
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
  
 0.688
nreC_2
Nitrogen regulation protein C.
  
    0.536
ALO17240.1
Iron-sulfur cluster repair di-iron protein.
       0.527
ybhS_2
Inner membrane transport permease YbhS.
  
  
 
0.512
ALO16379.1
Putative efflux pump membrane fusion protein.
 
  
 0.504
ALO17235.1
Hypothetical protein.
       0.459
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.