STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citE_2Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family. (286 aa)    
Predicted Functional Partners:
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase.
 
  
 0.998
citC
[Citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
  
 0.980
citF_2
Citrate lyase alpha chain.
 
  
 0.979
citE_1
Citrate lyase subunit beta.
 
 
0.966
citD
Citrate lyase gamma chain; Covalent carrier of the coenzyme of citrate lyase.
 
  
 0.966
citF_1
Citrate lyase alpha chain.
 
  
 0.914
ALO17033.1
Long-chain-fatty-acid--CoA ligase FadD13.
 
    
 0.886
fucA
L-fuculose phosphate aldolase.
   
    0.621
ywaD_3
Arginyl aminopeptidase.
       0.462
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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