STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT86782.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (216 aa)    
Predicted Functional Partners:
SDT86775.1
Signal transduction histidine kinase.
 
 0.975
SDT85598.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.935
SDU09359.1
Signal transduction histidine kinase.
 0.928
SDU05498.1
Two-component system, NarL family, sensor histidine kinase DesK.
 
 0.910
SDT98284.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
  
 0.824
SDT91646.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.772
SDT86767.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
 
  
 0.708
SDT86024.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
 0.653
SDT86084.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
      
 0.639
SDT87054.1
ABC-2 type transport system permease protein.
  
  0.587
Your Current Organism:
Schaalia radingae
NCBI taxonomy Id: 131110
Other names: ATCC 51856, Actinomyces radingae, BCCM/LMG:15960, CCUG 32394, CCUG 34270, CDC coryneform group E, CIP 105358, DSM 9169, LMG 15960, LMG:15960, S. radingae, strain APL1
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