STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU78763.1Pilus assembly protein CpaF. (386 aa)    
Predicted Functional Partners:
SDU78766.1
Tight adherence protein B.
  
  
 0.879
SDU78768.1
Type II secretion system (T2SS), protein F.
  
  
 0.879
SDU79769.1
Tight adherence protein C.
 
  
 0.876
SDU78762.1
Hypothetical protein.
       0.804
SDU78772.1
Protein of unknown function.
     
 0.713
SDU79766.1
Type II secretion system protein F (GspF).
  
 0.625
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
      0.538
SDU78758.1
Hypothetical protein.
       0.505
SDU78756.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.466
SDU79775.1
Hypothetical protein.
  
    0.459
Your Current Organism:
Arcanobacterium phocae
NCBI taxonomy Id: 131112
Other names: A. phocae, CIP 105740, DSM 10002, LMG 18722, LMG:18722, strain M1590/94/3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.