STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU79206.1LppP/LprE lipoprotein. (176 aa)    
Predicted Functional Partners:
SDU77705.1
NADH dehydrogenase subunit M.
    
 
 0.999
SDU78057.1
Hypothetical protein.
   
  0.903
SDU78575.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
  0.857
SDU78153.1
FHA domain-containing protein.
    
  0.853
SDU78155.1
FHA domain-containing protein.
    
  0.853
SDU81022.1
FHA domain-containing protein.
    
  0.853
SDU77501.1
Hypothetical protein.
    
 0.848
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
 
  0.819
SDU78921.1
Hypothetical protein.
   
 0.805
SDU80504.1
Lactocepin; Belongs to the peptidase S8 family.
   
 0.805
Your Current Organism:
Arcanobacterium phocae
NCBI taxonomy Id: 131112
Other names: A. phocae, CIP 105740, DSM 10002, LMG 18722, LMG:18722, strain M1590/94/3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.