STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU80118.1S-formylglutathione hydrolase FrmB. (434 aa)    
Predicted Functional Partners:
SDU78281.1
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase.
  
 0.969
SDU78593.1
Pimeloyl-ACP methyl ester carboxylesterase.
    
 0.841
SDU80609.1
Acetyl esterase/lipase.
    
 0.841
SDU78811.1
DNA-binding transcriptional regulator, FrmR family.
  
  
 0.589
SDU78880.1
Threonine 3-dehydrogenase.
   
 
 0.583
lysS-2
lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
   
 0.573
SDU77724.1
NADH-quinone oxidoreductase subunit E.
    
 0.553
SDU77721.1
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
    
  0.551
SDU80122.1
Putative transport protein.
       0.548
SDU79313.1
ferredoxin--NADP+ reductase.
   
 
  0.547
Your Current Organism:
Arcanobacterium phocae
NCBI taxonomy Id: 131112
Other names: A. phocae, CIP 105740, DSM 10002, LMG 18722, LMG:18722, strain M1590/94/3
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