STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU80504.1Lactocepin; Belongs to the peptidase S8 family. (1792 aa)    
Predicted Functional Partners:
SDU79530.1
Putative Ig domain-containing protein.
 
  0.819
SDU79529.1
Hypothetical protein.
 
  0.809
SDU79206.1
LppP/LprE lipoprotein.
   
 0.805
SDU78717.1
Cna protein B-type domain-containing protein.
  
  0.728
SDU79068.1
LPXTG-motif cell wall anchor domain-containing protein.
  
  0.714
SDU82471.1
Cna protein B-type domain-containing protein.
  
  0.714
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.632
SDU78575.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
 
 0.620
SDU81420.1
Hypothetical protein.
  
 
 0.610
SDU80507.1
Pyroglutamyl-peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
       0.529
Your Current Organism:
Arcanobacterium phocae
NCBI taxonomy Id: 131112
Other names: A. phocae, CIP 105740, DSM 10002, LMG 18722, LMG:18722, strain M1590/94/3
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.