STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EG19_03685Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)    
Predicted Functional Partners:
EG19_02470
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
EG19_03690
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.757
EG19_03680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.738
htpX
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M48B family.
       0.733
EG19_03695
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.579
Your Current Organism:
Thermoanaerobaculum aquaticum
NCBI taxonomy Id: 1312852
Other names: DSM 24856, JCM 18256, T. aquaticum, Thermoanaerobaculum aquaticum Losey et al. 2013, bacterium MP-01, strain MP-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.