A0A0N4ZYA2 protein (Parastrongyloides trichosuri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0N4ZYA2

Uncharacterized protein. (247 aa)

Predicted Functional Partners:

A0A0N4ZKS2

0.989

A0A0N4ZND5

0.945

A0A0N4ZVA1

0.935

A0A0N5A3H0

0.914

A0A0N5A2G4

0.905

A0A0N4ZJR8

0.889

A0A0N5A3A2

0.849

A0A0N4ZK96

0.669

A0A0N4ZYM0

0.668

A0A0N4ZHX4

0.664

Your Current Organism:

Parastrongyloides trichosuri

NCBI taxonomy Id: 131310
Other names: P. trichosuri

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N4ZHX4	A0A0N4ZJR8	Sec2p domain-containing protein.	Uncharacterized protein.	0.664
A0A0N4ZHX4	A0A0N4ZK96	Sec2p domain-containing protein.	Uncharacterized protein.	0.989
A0A0N4ZHX4	A0A0N4ZKS2	Sec2p domain-containing protein.	Uncharacterized protein.	0.613
A0A0N4ZHX4	A0A0N4ZND5	Sec2p domain-containing protein.	Uncharacterized protein.	0.693
A0A0N4ZHX4	A0A0N4ZVA1	Sec2p domain-containing protein.	Uncharacterized protein.	0.653
A0A0N4ZHX4	A0A0N4ZYA2	Sec2p domain-containing protein.	Uncharacterized protein.	0.664
A0A0N4ZHX4	A0A0N5A2G4	Sec2p domain-containing protein.	Uncharacterized protein.	0.661
A0A0N4ZHX4	A0A0N5A3H0	Sec2p domain-containing protein.	Uncharacterized protein.	0.673
A0A0N4ZJR8	A0A0N4ZHX4	Uncharacterized protein.	Sec2p domain-containing protein.	0.664
A0A0N4ZJR8	A0A0N4ZK96	Uncharacterized protein.	Uncharacterized protein.	0.674
A0A0N4ZJR8	A0A0N4ZKS2	Uncharacterized protein.	Uncharacterized protein.	0.871
A0A0N4ZJR8	A0A0N4ZND5	Uncharacterized protein.	Uncharacterized protein.	0.890
A0A0N4ZJR8	A0A0N4ZVA1	Uncharacterized protein.	Uncharacterized protein.	0.866
A0A0N4ZJR8	A0A0N4ZYA2	Uncharacterized protein.	Uncharacterized protein.	0.889
A0A0N4ZJR8	A0A0N4ZYM0	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.516
A0A0N4ZJR8	A0A0N5A2G4	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A0N4ZJR8	A0A0N5A3A2	Uncharacterized protein.	Uncharacterized protein.	0.633
A0A0N4ZJR8	A0A0N5A3H0	Uncharacterized protein.	Uncharacterized protein.	0.894
A0A0N4ZK96	A0A0N4ZHX4	Uncharacterized protein.	Sec2p domain-containing protein.	0.989
A0A0N4ZK96	A0A0N4ZJR8	Uncharacterized protein.	Uncharacterized protein.	0.674