A0A0N4ZZK7 protein (Parastrongyloides trichosuri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0N4ZZK7

Uncharacterized protein. (528 aa)

Predicted Functional Partners:

A0A0N4ZPT2

0.911

A0A0N4ZRM0

0.738

A0A0N4ZMR6

0.704

A0A0N4ZGD1

0.694

A0A0N4ZPV7

0.682

A0A0N4ZEW3

0.633

A0A0N4ZX97

0.630

A0A0N4ZLK0

0.615

A0A0N4ZNK8

0.608

A0A0N4ZG63

0.606

Your Current Organism:

Parastrongyloides trichosuri

NCBI taxonomy Id: 131310
Other names: P. trichosuri

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N4ZEW3	A0A0N4ZNK8	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
A0A0N4ZEW3	A0A0N4ZPT2	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
A0A0N4ZEW3	A0A0N4ZX97	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	Ubiquitin-like domain-containing protein.	0.913
A0A0N4ZEW3	A0A0N4ZZK7	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	Uncharacterized protein.	0.633
A0A0N4ZG63	A0A0N4ZLK0	HUN domain-containing protein.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.980
A0A0N4ZG63	A0A0N4ZMR6	HUN domain-containing protein.	Uncharacterized protein.	0.945
A0A0N4ZG63	A0A0N4ZZK7	HUN domain-containing protein.	Uncharacterized protein.	0.606
A0A0N4ZGD1	A0A0N4ZZK7	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.694
A0A0N4ZLK0	A0A0N4ZG63	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	HUN domain-containing protein.	0.980
A0A0N4ZLK0	A0A0N4ZMR6	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Uncharacterized protein.	0.998
A0A0N4ZLK0	A0A0N4ZZK7	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Uncharacterized protein.	0.615
A0A0N4ZMR6	A0A0N4ZG63	Uncharacterized protein.	HUN domain-containing protein.	0.945
A0A0N4ZMR6	A0A0N4ZLK0	Uncharacterized protein.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.998
A0A0N4ZMR6	A0A0N4ZZK7	Uncharacterized protein.	Uncharacterized protein.	0.704
A0A0N4ZNK8	A0A0N4ZEW3	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.999
A0A0N4ZNK8	A0A0N4ZPT2	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
A0A0N4ZNK8	A0A0N4ZX97	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	Ubiquitin-like domain-containing protein.	0.895
A0A0N4ZNK8	A0A0N4ZZK7	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	Uncharacterized protein.	0.608
A0A0N4ZPT2	A0A0N4ZEW3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.999
A0A0N4ZPT2	A0A0N4ZNK8	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999