STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaAChromosomal replication initiator protein DnaA. (478 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III beta subunit.
 
 0.997
dnaB
Replicative DNA helicase.
   
 
 0.940
recF
DNA replication and repair protein RecF.
 
  
 0.890
topA
DNA topoisomerase I.
 
   
 0.684
rpmH
50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
  
 0.675
rpoB
DNA-directed RNA polymerase beta subunit; Protein synonym:transcriptase beta subunit; Belongs to the RNA polymerase beta chain family.
  
  
 0.656
BAN01917.1
Putative two-component histidine kinase.
  
  
 0.629
BAN00407.1
Putative ABC transporter ATP-binding protein.
  
   
 0.628
ileS
isoleucyl-tRNA synthetase; Protein synonym:isoleucine--tRNA ligase.
  
  
 0.623
parA
Chromosome partitioning protein ParA.
  
 
 0.621
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.