STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN00451.1Hypothetical protein. (261 aa)    
Predicted Functional Partners:
gspE
Putative type II secretion system protein E; Protein synonym:general secretion pathway protein E.
     
 0.800
BAN00446.1
Hypothetical protein.
     
 0.793
BAN00447.1
Hypothetical protein.
     
 0.793
BAN00449.1
Hypothetical protein.
       0.773
BAN00450.1
Hypothetical protein.
       0.773
BAN00443.1
Hypothetical protein.
     
 0.612
BAN00445.1
Hypothetical protein.
       0.596
gspE-2
Protein synonym:general secretion pathway protein E.
  
 
 0.590
dprA
DNA processing protein DprA.
  
  
 0.588
BAN00442.1
Hypothetical protein.
       0.580
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.