STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN00554.1Putative AfsR family transcriptional regulator. (1219 aa)    
Predicted Functional Partners:
BAN01343.1
Putative transcriptional regulator.
 
  
 0.582
BAN04237.1
Hypothetical protein.
 
   
 0.476
BAN01658.1
Putative AfsR family transcriptional regulator.
 
  
0.449
BAN00878.1
Hypothetical protein.
 
  
 0.428
BAN03795.1
Putative LuxR family transcriptional regulator.
 
  
 0.416
BAN00556.1
Hypothetical protein.
  
    0.414
BAN00557.1
Hypothetical protein.
       0.414
BAN00555.1
Hypothetical protein.
       0.402
BAN01817.1
Hypothetical protein.
 
     0.400
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.