STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN00587.1Peptidase A24 family protein. (262 aa)    
Predicted Functional Partners:
gspE-3
Protein synonym:general secretion pathway protein E.
 
   
 0.928
gspE-2
Protein synonym:general secretion pathway protein E.
 
 
 0.919
gspF
Protein synonym:general secretion pathway protein F.
 
  
 0.907
BAN00508.1
Hypothetical protein.
 
  
 0.722
dprA
DNA processing protein DprA.
 
  
 0.635
BAN00589.1
Hypothetical protein.
       0.543
comEA
Putative competence protein ComEA.
   
  
 0.531
BAN02915.1
Signal peptidase I.
 
   
 0.507
comEC
Putative competence protein ComEC.
  
  
 0.482
BAN00509.1
Hypothetical protein.
  
  
 0.467
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.