STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prdBPutative D-proline reductase gamma subunit. (387 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA(Sec) selenium transferase; Protein synonym:selenocysteinyl-tRNA(Sec) synthase.
 
   
 0.714
selB
Selenocysteine-specific elongation factor.
 
   
 0.710
selD
Selenide, water dikinase; Protein synonym:selenium donor protein; protein synonym:selenophosphate synthetase.
 
   
 0.617
BAN00592.1
Putative oxidoreductase.
       0.553
BAN00593.1
Fumarylacetoacetate hydrolase family protein.
       0.553
BAN00595.1
Hypothetical protein.
       0.533
BAN00596.1
Wax ester synthase/diacylglycerol acyltransferase.
       0.499
BAN00597.1
Putative fatty-acid--CoA ligase; Protein synonym:acyl-CoA synthetase.
       0.460
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.