STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trkATrk system potassium uptake protein TrkA. (449 aa)    
Predicted Functional Partners:
trkH
Trk system potassium uptake protein TrkH.
 
 
 0.957
ktrB
Ktr system potassium uptake protein KtrB.
  
 
 0.672
BAN02372.1
Putative rRNA methyltransferase.
  
   0.607
BAN00706.1
Putative polyprenyl diphosphate synthase.
  
    0.521
BAN01216.1
Molybdopterin synthase large subunit MoaE; Protein synonym:molybdenum cofactor biosynthesis protein E.
   
    0.459
hemD
Putative uroporphyrinogen III synthase.
  
    0.445
selA
L-seryl-tRNA(Sec) selenium transferase; Protein synonym:selenocysteinyl-tRNA(Sec) synthase.
   
    0.416
BAN00705.1
Hypothetical protein.
  
    0.410
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.