STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN00759.1Putative ATP-dependent DNA ligase. (337 aa)    
Predicted Functional Partners:
BAN01824.1
Hypothetical protein.
   
 0.982
BAN03206.1
Hypothetical protein.
   
 0.978
dnaN
DNA polymerase III beta subunit.
   
 0.954
BAN00638.1
Putative ATP-dependent DNA ligase.
 
    
0.929
BAN01823.1
DNA end-binding protein Ku.
 
  
 0.846
polA
DNA polymerase I.
  
 0.804
xthA
Exodeoxyribonuclease III.
 
 
 0.779
BAN03002.1
Putative ATP-dependent DNA ligase.
 
   
 0.737
BAN00582.1
Putative 5'-3' exonuclease.
  
 0.719
BAN03544.1
Putative DNA topoisomerase.
 
 
 
 0.709
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.