STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrFOrotidine 5'-phosphate decarboxylase. (278 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase.
  
 
 0.995
pyrR
Pyrimidine operon regulatory protein/uracil phosphoribosyltransferase; Protein synonym:bifunctional protein PyrR.
  
 
 0.986
upp
Uracil phosphoribosyltransferase; Protein synonym:UMP pyrophosphorylase.
  
 
 0.962
pyrB
Aspartate carbamoyltransferase.
 
  
 0.960
carB
Protein synonym:carbamoyl-phosphate synthetase ammonia chain.
 
  
 0.951
pyrD
Dihydroorotate dehydrogenase.
  
  
 0.950
carA
Protein synonym:carbamoyl-phosphate synthetase glutamine chain.
 
  
 0.940
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
   
 
 0.938
udk
Uridine kinase.
  
 0.923
BAN03568.1
Hypothetical protein.
  
 0.923
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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