STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN01658.1Putative AfsR family transcriptional regulator. (957 aa)    
Predicted Functional Partners:
BAN01125.1
Hypothetical protein.
 
  
 0.681
pfaA
Omega-3 polyunsaturated fatty acid synthase PfaA.
 
   
 0.624
pfaBC
Putative omega-3 polyunsaturated fatty acid synthase PfaBC.
 
   
 0.606
BAN01343.1
Putative transcriptional regulator.
 
  
0.589
pfaD
Omega-3 polyunsaturated fatty acid synthase PfaD.
       0.526
BAN03795.1
Putative LuxR family transcriptional regulator.
 
  
 0.522
BAN03895.1
Putative LuxR family transcriptional regulator.
  
  
 0.515
BAN01052.1
Hypothetical protein.
 
  
0.488
BAN01106.1
Hypothetical protein.
 
  
0.488
BAN00554.1
Putative AfsR family transcriptional regulator.
 
  
0.449
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.