Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BAN01710.1 | BAN01711.1 | YM304_13960 | YM304_13970 | Putative ATP-dependent RNA helicase. | Hypothetical protein. | 0.757 |
BAN01710.1 | BAN02646.1 | YM304_13960 | YM304_23320 | Putative ATP-dependent RNA helicase. | Hypothetical protein. | 0.808 |
BAN01710.1 | BAN04000.1 | YM304_13960 | YM304_36860 | Putative ATP-dependent RNA helicase. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.751 |
BAN01710.1 | fusA | YM304_13960 | YM304_08150 | Putative ATP-dependent RNA helicase. | Elongation factor G; Protein synonym:EF-G. | 0.779 |
BAN01710.1 | rnd | YM304_13960 | YM304_20250 | Putative ATP-dependent RNA helicase. | Putative ribonuclease D. | 0.907 |
BAN01710.1 | rph | YM304_13960 | YM304_27700 | Putative ATP-dependent RNA helicase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.762 |
BAN01710.1 | rpsA | YM304_13960 | YM304_21410 | Putative ATP-dependent RNA helicase. | Putative 30S ribosomal protein S1. | 0.843 |
BAN01710.1 | rpsD | YM304_13960 | YM304_08740 | Putative ATP-dependent RNA helicase. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.879 |
BAN01710.1 | rpsE | YM304_13960 | YM304_08420 | Putative ATP-dependent RNA helicase. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.783 |
BAN01710.1 | rpsK | YM304_13960 | YM304_08730 | Putative ATP-dependent RNA helicase. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.817 |
BAN01711.1 | BAN01710.1 | YM304_13970 | YM304_13960 | Hypothetical protein. | Putative ATP-dependent RNA helicase. | 0.757 |
BAN02646.1 | BAN01710.1 | YM304_23320 | YM304_13960 | Hypothetical protein. | Putative ATP-dependent RNA helicase. | 0.808 |
BAN02646.1 | BAN04000.1 | YM304_23320 | YM304_36860 | Hypothetical protein. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.535 |
BAN02646.1 | fusA | YM304_23320 | YM304_08150 | Hypothetical protein. | Elongation factor G; Protein synonym:EF-G. | 0.837 |
BAN02646.1 | rnd | YM304_23320 | YM304_20250 | Hypothetical protein. | Putative ribonuclease D. | 0.906 |
BAN02646.1 | rph | YM304_23320 | YM304_27700 | Hypothetical protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.792 |
BAN02646.1 | rpsD | YM304_23320 | YM304_08740 | Hypothetical protein. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.992 |
BAN02646.1 | rpsE | YM304_23320 | YM304_08420 | Hypothetical protein. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.992 |
BAN02646.1 | rpsK | YM304_23320 | YM304_08730 | Hypothetical protein. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.992 |
BAN04000.1 | BAN01710.1 | YM304_36860 | YM304_13960 | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Putative ATP-dependent RNA helicase. | 0.751 |
page 1 of 5