STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrdBRibonucleoside-diphosphate reductase small subunit. (361 aa)    
Predicted Functional Partners:
nrdA
Ribonucleoside-diphosphate reductase large subunit.
 0.999
tmk
Protein synonym:dTMP kinase.
  
 
 0.925
cmk
Cytidylate kinase.
    
 0.924
adk
Adenylate kinase; Protein synonym:ATP-AMP transphosphorylase.
     
 0.916
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
     
 0.916
pyk
Pyruvate kinase.
     
 0.910
pyk-2
Pyruvate kinase.
     
 0.910
gmk
Guanylate kinase.
     
 0.909
relA
GTP pyrophosphokinase; Protein synonym:ppGpp synthetase.
     
 0.903
BAN01729.1
Hypothetical protein.
  
    0.562
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.