STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pafBPutative proteasome accessory factor B. (317 aa)    
Predicted Functional Partners:
pafC
Putative proteasome accessory factor C.
     0.994
rpoZ
DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
   0.726
rpoB
DNA-directed RNA polymerase beta subunit; Protein synonym:transcriptase beta subunit; Belongs to the RNA polymerase beta chain family.
    
 
 0.677
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.660
rpoA
DNA-directed RNA polymerase alpha subunit; Protein synonym:transcriptase alpha subunit.
    
   0.660
BAN01963.1
Putative DeoR family transcriptional regulator.
  
     0.636
BAN02565.1
Putative DeoR family transcriptional regulator.
 
     0.582
BAN01796.1
Putative cysteine desulfurase.
       0.558
sufC
Putative FeS assembly ATPase SufC.
       0.558
BAN01794.1
Hypothetical protein.
       0.543
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.