STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
truBtRNA pseudouridine synthase B; Protein synonym:psi55 synthase. (290 aa)    
Predicted Functional Partners:
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
 
 0.990
rbfA
Ribosome-binding factor A.
  
  
 0.990
ribF
FMN adenylyltransferase/riboflavin kinase; Bifunctional protein; protein synonym:FAD synthetase; protein synonym:flavokinase; protein synonym:riboflavin biosynthesis protein RibF.
  
 0.976
BAN02372.1
Putative rRNA methyltransferase.
 
 
 0.945
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.932
rpsO
30S ribosomal protein S15.
  
 
 0.889
nusA
Transcription elongation protein NusA; Participates in both transcription termination and antitermination.
  
    0.874
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.826
truA
Protein synonym:tRNA-uridine isomerase I.
 
 
 0.821
pnp
Polyribonucleotide nucleotidyltransferase; Protein synonym:polynucleotide phosphorylase.
 
  
 0.817
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.